SAQC: SNP Array Quality Control
نویسندگان
چکیده
منابع مشابه
Evaluating the influence of quality control decisions and software algorithms on SNP calling for the affymetrix 6.0 SNP array platform.
OBJECTIVE Our goal was to evaluate the influence of quality control (QC) decisions using two genotype calling algorithms, CRLMM and Birdseed, designed for the Affymetrix SNP Array 6.0. METHODS Various QC options were tried using the two algorithms and comparisons were made on subject and call rate and on association results using two data sets. RESULTS For Birdseed, we recommend using the c...
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Figure S1 (Related to Figure 1). A. Genome graph showing distribution of SNPs across the genome. B. Estimated marker informativeness for an F2 intercross between wild caught sticklebacks. C. Histogram showing the distribution of average pairwise FST between global populations. Figure S2 (Related to Figure 3). A self dot-plot showing sequence similarity of a 390kb region on chromosome X with two...
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ژورنال
عنوان ژورنال: BMC Bioinformatics
سال: 2011
ISSN: 1471-2105
DOI: 10.1186/1471-2105-12-100